Get Table from Selected Database — get_table • pathdb

Retrieves a specific table from the database for a selected species.

Usage

get_table(species_id = NULL, table = NULL)

Arguments

species_id: Numeric. The selected species ID. If NULL, the function defaults to loading general organism info.
table: Character. The name of the table to retrieve (e.g., "geneInfo", "pathway"). If NULL, defaults to "geneInfo" (if species_id is provided) or "orgInfo" (if species_id is NULL).

Value

A data frame containing the data from the selected table.

See also

list_tables to see available tables for a species.

Examples

if (FALSE) { # interactive() && curl::has_internet()
# Retrieve geneInfo table for Indian Cobra Species
cobra_genes <- get_table(species_id = 99,
                         table = "geneInfo")

# View table
head(cobra_genes)
}